Bugs item #1768858, was opened at 2007-08-06 17:43
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Category: Python Library
Group: Python 2.5
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: MASK (mohammedsk)
Assigned to: Nobody/Anonymous (nobody)
Summary: Python - Operation time out problem
Initial Comment:
I have a program that reads from a file some search terms. The script uses Medline record parser pub med dictionary.
Since I search so many terms, the script times out. Here is the error:
Traceback (most recent call last):
File "(stdin)", line1, in <module>
File "search_all.py",line71, in <module>
Cur_record = medline_dict [id]
File "C:\Python25\Lib\site-packages\PubMed.py", line 103,
in_getitem_raise Key Error,x
Key Error: IOError('socket error',error(10060,'Operation timed out'))
I looked online for solutions and one solution was to add the following to the script:
import socket
socket.setdefaulttimeout(value)
But this code did not do anything, the script continues on timing out.
A complete Python script is attached.
Any help is appreciated.
Thanks,
Mohammed
----------------------------------------------------------------------
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https://sourceforge.net/tracker/?func=detail&atid=105470&aid=1768858&group_id=5470
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Message generated for change (Tracker Item Submitted) made by Item Submitter
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=105470&aid=1768858&group_id=5470
Please note that this message will contain a full copy of the comment thread,
including the initial issue submission, for this request,
not just the latest update.
Category: Python Library
Group: Python 2.5
Status: Open
Resolution: None
Priority: 5
Private: No
Submitted By: MASK (mohammedsk)
Assigned to: Nobody/Anonymous (nobody)
Summary: Python - Operation time out problem
Initial Comment:
I have a program that reads from a file some search terms. The script uses Medline record parser pub med dictionary.
Since I search so many terms, the script times out. Here is the error:
Traceback (most recent call last):
File "(stdin)", line1, in <module>
File "search_all.py",line71, in <module>
Cur_record = medline_dict [id]
File "C:\Python25\Lib\site-packages\PubMed.py", line 103,
in_getitem_raise Key Error,x
Key Error: IOError('socket error',error(10060,'Operation timed out'))
I looked online for solutions and one solution was to add the following to the script:
import socket
socket.setdefaulttimeout(value)
But this code did not do anything, the script continues on timing out.
A complete Python script is attached.
Any help is appreciated.
Thanks,
Mohammed
----------------------------------------------------------------------
You can respond by visiting:
https://sourceforge.net/tracker/?func=detail&atid=105470&aid=1768858&group_id=5470
_______________________________________________
Python-bugs-list mailing list
Unsubscribe: http://mail.python.org/mailman/options/python-bugs-list/list-python-bugs%40lists.gossamer-threads.com